部分细菌分类表

1产水菌门(Aquificae)1.1产水菌纲(Aquificae)2热袍菌门(Thermotogae)2.1热袍菌纲(Thermotogae)3热脱硫杆菌门(Thermodesulfobacteria)3.1热脱硫杆菌纲(Thermodesulfobacteria)4恐球菌-栖热菌门(Deinococcus-Thermus)4.1恐球菌纲(Deinococci)5产金菌门(Chrysiogenetes)5.1产金菌纲(Chrysiogenetes)6绿弯菌门(Chloroflexi)6.1绿弯菌纲(Chloroflexi)6.2厌氧绳菌纲(Anaerolineae)7热微菌门(Thermomicrobia)7.1热微菌纲(Thermomicrobia)8硝化螺旋菌门(Nitrospira)8.1硝化螺旋菌纲(Nitrospira)9脱铁杆菌门(Deferribacteres)9.1脱铁杆菌纲(Deferribacteres)10蓝藻门(Cyanobacteria)10.1蓝藻纲(Cyanobacteria)11绿菌门(Chlorobi)11.1绿菌纲(Chlorobia)12变形菌门(Proteobacteria)12.1α-变形菌纲(Alphaproteobacteria)12.2β-变形菌纲(Betaproteobacteria)12.3γ-变形菌纲(Gammaproteobacteria)12.4δ-变形菌纲(Deltaproteobacteria)12.5ε-变形菌纲(Epsilonproteobacteria)13厚壁菌门(Firmicutes)（低G+C革兰氏阳性菌）13.1梭菌纲(Clostridia)13.2柔膜菌纲(Mollicutes)13.3芽孢杆菌纲(Bacilli)14放线菌门(Actinobacteria)（高G+C革兰氏阳性菌）14.1放线菌纲(Actinobacteria)15浮霉菌门(Planctomycetes)15.1浮霉菌纲(Planctomycetacia)16衣原体门(Chlamydiae)16.1衣原体纲(Chlamydiae)17螺旋体门(Spirochaetes)17.1螺旋体纲(Spirochaetes)18纤维杆菌门(Fibrobacteres)18.1纤维杆菌纲(Fibrobacteres)19酸杆菌门(Acidobacteria)19.1酸杆菌纲(Acidobacteria)20拟杆菌门(Bacteroidetes)20.1拟杆菌纲(Bacteroidetes)20.2黄杆菌纲(Flavobacteria)20.3鞘脂杆菌纲(Sphingobacteria)21梭杆菌门(Fusobacteria)21.1梭杆菌纲(Fusobacteria)22疣微菌门(Verrucomicrobia)22.1疣微菌纲(Verrucomicrobiae)23网团菌门(Dictyoglomi)23.1网团菌纲(Dictyoglomi)24芽单胞菌门(Gemmatimonadetes)24.1芽单胞菌纲(Gemmatimonadetes)产水菌门(Aquificae)产水菌纲(Aquificae)产水菌目(Aquificales)产水菌科(Aquificaceae)产水菌属(Aquifex)(Calderobacterium)(Hydrogenobaculum)(Hydrogenobacter)(Hydrogenothermus)(Persephonella)(Sulfurihydrogenibium)(Thermocrinis)科未定(Balnearium)(Desulfurobacterium)(Thermovibrio)热袍菌门(Thermotogae)热袍菌纲(Thermotogae)热袍菌目(Thermotogales)热袍菌科(Thermotogaceae)热袍菌属(Thermotoga)(Fervidobacterium)(Geotoga)(Marinitoga)(Petrotoga)(Thermosipho)热脱硫杆菌门(Thermodesulfobacteria)热脱硫杆菌纲(Thermodesulfobacteria)热脱硫杆菌目(Thermodesulfobacteriales)热脱硫杆菌科(Thermodesulfobacteriaceae)热脱硫杆菌属(Thermodesulfobacterium)(Thermodesulfatator)恐球菌-栖热菌门(Deinococcus-Thermus)恐球菌纲(Deinococci)恐球菌目(Deinococcales)恐球菌科(Deinococcaceae)恐球菌属(Deinococcus)（注：依据希腊语δεινος/deinos，与“恐龙”的dino-同源）栖热菌目(Thermales)栖热菌科(Thermaceae)栖热菌属(Thermus)海栖热菌属(Marinithermus)亚栖热菌属(Meiothermus)海洋栖热菌属(Oceanithermus)火山栖热菌属(Vulcanithermus)产金菌门(Chrysiogenetes)产金菌纲(Chrysiogenetes)产金菌目(Chrysiogenales)产金菌科(Chrysiogenaceae)产金菌属(Chrysiogenes)绿弯菌门(Chloroflexi)绿弯菌纲(Chloroflexi)绿弯菌目(Chloroflexales)绿弯菌科(Chloroflexaceae)绿弯菌属(Chloroflexus)绿线菌属(Chloronema)太阳发菌属(Heliothrix)玫瑰弯菌属(Roseiflexus)颤绿菌科(Oscillochloridaceae)颤绿菌属(Oscilochloris)爬管菌目(Herpetosiphonales)爬管菌科(Herpetosiphonaceae)爬管菌属(Herpetosiphon)厌氧绳菌纲(Anaerolineae)厌氧绳菌目(Anaerolineales)厌氧绳菌科(Anaerolineaceae)厌氧绳菌属(Anaerolinea)暖绳菌属(Caldilinea)热微菌门(Thermomicrobia)热微菌纲(Thermomicrobia)热微菌目(Thermomicrobiales)热微菌科(Thermomicrobiaceae)热微菌属(Thermomicrobium)硝化螺旋菌门(Nitrospira)硝化螺旋菌纲(Nitrospira)硝化螺旋菌目(Nitrospirales)硝化螺旋菌科(Nitrospiraceae)硝化螺旋菌属(Nitrospira)钩端螺菌属(Leptospirillum)磁杆菌属(Magnetobacterium)热脱硫弧菌属(Thermodesulfovibrio)脱铁杆菌门(Deferribacteres)脱铁杆菌纲(Deferribacteres)脱铁杆菌目(Deferribacterales)脱铁杆菌科(Deferribacteraceae)脱铁杆菌属(Deferribacter)(Denitrovibrio)(Flexistipes)(Geovibrio)科未定(Synergistes)(Caldithrix)蓝藻门(Cyanobacteria)蓝藻纲(Cyanobacteria)注：本文采用的Bergey's手册中蓝藻内的分类，不论目科属，均为形态分类，其中目在手册中为“Subsection”而非“Order”，目、科均未列名称，此处目名称为习习用法，科不列名称；属除Halospirulina和Trichodesmium之外均标为“形态属”(FormGenus)而非“属”(Genus)。表中在形态分类后面加注"@"。预料不久的将来整个蓝藻分类系统将会大调，与其它细菌统一为系统发育分类系统。此外，因汉语“藻”字可指多种水生光合产氧生物，包括多支互不相关的原生生物甚至高等水生植物，此处仍用按照“藻”翻译蓝藻门(Cyanobacteria)细菌。但也可依据个人理念将名称定为“某菌”或“某蓝菌”，但应注意避免与其余细菌重名。色球藻目(Chroococcales)@第一科@管孢藻属(Chamaesiphon)@色球藻属(Chroococcus)@(Cyanobacterium)@(Cyanobium)@(Cyanothece)@蓝纤维藻属(Dactylococcopsis)@(Gloeobacter)@黏球藻属(Gloeocapsa)@黏杆藻属(Gloeothece)@微囊藻属(Microcystis)@原绿球藻属(Prochlorococcus)@原绿藻属(Prochloron)@聚球藻属(Synechococcus)@集胞藻属(Synechocystis)@宽球藻目(Pleurocapsales)@第一科@(Cyanocystis)@(Dermocarpella)@(Stanieria)@异球藻属(Xenococcus)@第二科@拟色球藻属(Chroococcidiopsis)@黏囊藻属(Myxosarcina)@宽球藻属(Pleurocapsa)@颤藻目(Oscillatoriales)@第一科@节螺藻属(Arthrospira)@（包含商业化螺旋藻）(Borzia)@(Crinalium)@(Geitlerinema)@盐螺旋藻属(Halospirulina)(Leptolyngbya)@(Limnothrix)@鞘丝藻属(Lyngbya)@微鞘藻属(Microcoleus)@颤藻属(Oscillatoria)@(Planktothrix)@原绿发藻属(Prochlorothrix)@(Pseudanabaena)@螺旋藻属(Spirulina)@(Starria)@束藻属(Symploca)@束毛藻属(Trichodesmium)(Tychonema)@念珠藻目(Nostocales)@第一科@鱼腥藻属(Anabaena)@项圈藻属(Anabaenopsis)@束丝藻属(Aphanizomenon)@(Cyanospira)@(Cylindrospermopsis)@筒孢藻属(Cylindrospermum)@节球藻属(Nodularia)@念珠藻属(Nostoc)@伪枝藻属(Scytonema)@第二科@眉藻属(Calothrix)@胶须藻属(Rivularia)@单歧藻属(Tolypothrix)@真枝藻目(Stigonematales)@第一科@(Chlorogloeopsis)@费氏藻属(Fischerella)@(Geitleria)@(Iyengariella)@拟念珠藻属(Nostochopsis)@真枝藻属(Stigonema)@绿菌门(Chlorobi)绿菌纲(Chlorobia)绿菌目(Chlorobiales)绿菌科(Chlorobiaceae)绿菌属(Chlorobium)臂绿菌属(Ancalochloris)绿棒菌属(Chlorobaculum)绿爬菌属(Chloroherpeton)暗网菌属(Pelodictyon)突柄绿菌属(Prosthecochloris)变形菌门(Proteobacteria)α-变形菌纲(Alphaproteobacteria)红螺菌目(Rhodospirillales)红螺菌科(Rhodospirillaceae)红螺菌属(Rhodospirillum)固氮螺菌属(Azospirillum)(Inquilinus)磁螺菌属(Magnetospirillum)(Phaeospirillum)(Rhodocista)红螺旋菌属(Rhodospira)(Rhodovibrio)(Roseospira)(Skermanella)(Thalassospira)(Tistrella)醋杆菌科(Acetobacteraceae)醋杆菌属(Acetobacter)嗜酸菌属(Acidiphilium)(Acidisphaera)(Acidocella)(Acidomonas)(Asaia)(Craurococcus)葡糖醋杆菌属(Gluconacetobacter)葡糖杆菌属(Gluconobacter)(Kozakia)(Muricoccus)(Paracraurococcus)(Rhodopila)(Roseococcus)(Rubritepida)(Stella)(Teichococcus)(Zavarzinia)立克次体目(Rickettsiales)立克次体科(Rickettsiaceae)立克次体属(Rickettsia)(Orientia)无形体科(Anaplasmataceae)无形体属(Anaplasma)(Aegyptianella)(Cowdria)埃里希体属(Ehrlichia)新立克次体属(Neorickettsia)沃巴赫体属(Wolbachia)(Xenohaliotis)全孢菌科(Holosporaceae)全孢菌属(Holospora)科未定(Caedibacter)(Lyticum)(Odyssella)(Pseudocaedibacter)(Symbiotes)(Tectibacter)红细菌目(Rhodobacterales)红细菌科(Rhodobacteraceae)红细菌属(Rhodobacter)(Ahrensia)(Albidovulum)(Amaricoccus)(Antarctobacter)(Gemmobacter)(Hirschia)生丝单胞菌属(Hyphomonas)(Jannaschia)(Ketogulonicigenium)(Leisingera)(Maricaulis)(Methylarcula)(Oceanicaulis)(Octadecabacter)(Pannonibacter)副球菌属(Paracoccus)(Pseudorhodobacter)(Rhodobaca)(Rhodothalassium)小红卵菌属(Rhodovulum)(Roseibium)(Roseinatronobacter)(Roseivivax)玫瑰杆菌属(Roseobacter)(Roseovarius)(Rubrimonas)(Ruegeria)(Satittula)(Silicibacter)(Staleya)(Stappia)(Sulfitobacter)鞘脂单胞菌目(Sphingomonadales)鞘脂单胞菌科(Sphingomonadaceae)鞘脂单胞菌属(Sphingomonas)(Blastomonas)赤杆菌属(Erythrobacter)(Erythromicrobium)(Erythromonas)(Novosphingobium)紫杆菌属(Porphyrobacter)(Rhizomonas)(Sandaracinobacter)(Sphingobium)(Sphingopyxis)发酵单胞菌属(Zymomonas)柄杆菌目(Caulobacterales)柄杆菌科(Caulobacteraceae)柄杆菌属(Caulobacter)(Asticcacaulis)(Brevundimonas)(Phenylobacterium)根瘤菌目(Rhizobiales)根瘤菌科(Rhizobiaceae)根瘤菌属(Rhizobium)土壤杆菌属(Agrobacterium)(Allorhizobium)(Carbophilus)(Chelatobacter)剑菌属(Ensifer)中华根瘤菌属(Sinorhizobium)橙单胞菌科(Aurantimonadaceae)橙单胞菌属(Aurantimonas)(Fulvimarina)巴通体科(Bartonellaceae)巴通体属(Bartonella)布鲁氏菌科(Brucellaceae)布鲁氏菌属(Brucella)支动菌属(Mycoplana)苍白杆菌属(Ochrobactrum)叶杆菌科(Phyllobacteriaceae)叶杆菌属(Phyllobacterium)(Aminobacter)(Aquamicrobium)(Defluvibacter)(Liberibacter)中慢生根瘤菌属(Mesorhizobium)(Nitratireductor)(Pseudaminobacter)甲基孢囊菌科(Methylocystaceae)甲基孢囊菌属(Methylocystis)(Albibacter)(Methylopila)(Methylosinus)(Terasakiella)拜叶林克氏菌科(Beijerinckiaceae)拜叶林克氏菌属(Beijerinckia)(Chelatococcus)(Methyulocapsa)(Methylocella)慢生根瘤菌科(Bradyrhizobiaceae)慢生根瘤菌属(Bradyrhizobium)阿菲波菌属(Afipia)(Agromonas)芽生杆菌属(Blastobacter)(Bosea)硝化杆菌属(Nitrobacter)(Oligotropha)(Rhodoblastus)红假单胞菌属(Rhodopseudomonas)生丝微菌科(Hyphomicrobiaceae)生丝微菌属(Hyphomicrobium)(Ancalomicrobium)(Ancylobacter)(Angulomicrobium)(Aquabacter)(Azorhizobium)(Blastochloris)(Devosia)(Dichotomicrobium)(Filomicrobium)(Gemmiger)(Labrys)(Methylorhabdus)土微菌属(Pedomicrobium)突柄微菌属(Prosthecomicrobium)(Rhodomicrobium)(Rhodoplanes)(Seliberia)(Starkeya)黄色杆菌属(Xanthobacter)甲基杆菌科(Methylobacteriaceae)甲基杆菌属(Methylobacterium)(Microvirga)(Protomonas)(Roseomonas)红菌科(Rhodobiaceae)红菌属(Rhodobium)(Roseospirillum)短小盒菌目(Parvularculales)短小盒菌科(Parvularculaceae)短小盒菌属(Parvularcula)β-变形菌纲(Betaproteobacteria)伯克氏菌目(Burkholderiales)伯克氏菌科(Burkholderiaceae)伯克氏菌属(Burkholderia)(Cupriavidus)(Lautropia)(Limnobacter)(Pandoraea)(Paucimonas)(Polynucleobacter)青枯菌属(Ralstonia)(Thermothrix)沃特氏菌属(Wautersia)草酸杆菌科(Oxalobacteraceae)草酸杆菌属(Oxalobacter)(Duganella)(Herbaspirillum)(Janthinobacterium)(Massilia)(Oxalicibacterium)(Telluria)产碱菌科(Alcaligenaceae)产碱菌属(Alcaligenes)无色杆菌属(Achromobacter)博德氏菌属(Bordetella)(Brackiella)德克斯氏菌属(Derxia)(Kerstersia)(Oligella)(Pelistega)(Pigmentiphaga)(Sutterella)(Taylorella)丛毛单胞菌科(Comamonadaceae)丛毛单胞菌属(Comamonas)食酸菌属(Acidovorax)(Alcyclophilus)(Brachymonas)(Caldimonas)代尔夫特菌属(Delftia)(Diaphorobacter)噬氢菌属(Hydrogenophaga)(Hylemonella)(Lampropedia)(Macromonas)(Ottowia)(Polaromonas)(Ramlibacter)(Rhodoferax)(Variovorax)(Xenophilus)科未定(Aquabacterium)(Ideonella)纤发菌属(Leptothrix)(Roseateles)红长命菌属(Rubrivivax)(Schlegelella)(Sphaerotilus)(Tepidimonas)(Thiomonas)(Xylophilus)嗜氢菌目(Hydrogenophilales)嗜氢菌科(Hydrogenophilaceae)嗜氢菌属(Hydrogenophilus)硫杆状菌属(Thiobacillus)嗜甲基菌目(Methylophilales)嗜甲基菌科(Methylophilaceae)嗜甲基菌属(Methylophilus)(Methylobacillus)(Methylovorus)奈瑟菌目(Neisseriales)奈瑟菌科(Neisseriaceae)奈瑟菌属(Neisseria)(Alysiella)水螺菌属(Aquaspirillum)(Chromobacterium)艾肯氏菌属(Eikenella)(Formivibrio)(Iodobacter)金氏菌属(Kingella)(Laribacter)(Microvirgula)(Morococcus)(Prolinoborus)(Simonsiella)(Vitreoscilla)(Vogesella)亚硝化单胞菌目(Nitrosomonadales)亚硝化单胞菌科(Nitrosomonadaceae)亚硝化单胞菌属(Nitrosomonas)(Nitrosolobus)亚硝化螺旋菌属(Nitrosospira)螺菌科(Spirillaceae)螺菌属(Spirillum)嘉利翁氏菌科(Gallionellaceae)加利翁氏菌属(Gallionella)红环菌目(Rhodocyclales)红环菌科(Rhodocyclaceae)红环菌属(Rhodocyclus)固氮弓菌属(Azoarcus)(Azonexus)(Azospira)(Azovibrio)(Dechloromonas)(Dechlorosoma)(Ferribacterium)(Propionibacter)(Propionivibrio)(Quadricoccus)(Sterolibacterium)陶厄氏菌属(Thauera)动胶菌属(Zoogloea)普罗卡杆菌目(Procabacteriales)普罗卡杆菌科(Procabacteriaceae)普罗卡杆菌属(Procabacter)γ-变形菌纲(Gammaproteobacteria)着色菌目(Chromatiales)着色菌科(Chromatiaceae)着色菌属(Chromatium)(Allochromatium)(Amoebobacter)盐着色菌属(Halochromatium)(Isochromatium)(Lamprobacter)(Lamprocystis)(Marichromatium)亚硝化球菌属(Nitrosococcus)(Pfennigia)棍着色菌属(Rhabdochromatium)(Rheinheimera)热着色菌属(Thermochromatium)硫碱球菌属(Thioalkalicoccus)硫橄榄菌属(Thiobaca)硫匣菌属(Thiocapsa)硫球菌属(Thiococcus)硫囊菌属(Thiocystis)硫网菌属(Thiodictyon)硫黄球菌属(Thioflavicoccus)硫盐匣菌属(Thiohalocapsa)(Thiolamprovum)(Thiopedia)硫红球菌属(Thiorhodococcus)硫红弧菌属(Thiorhodovibrio)硫螺菌属(Thiospirillum)外硫红螺旋菌科(Ectothiorhodospiraceae)外硫红螺旋菌属(Ectothiorhodospira)碱湖生菌属(Alcalilimnicola)碱螺菌属(Alkalispirillum)(Arhodomonas)盐红螺旋菌属(Halorhodospira)硝化球菌属(Nitrococcus)硫碱螺旋菌属(Thioalkalispira)硫碱弧菌属(Thialkalivibrio)硫红螺旋菌属(Thiorhodospira)盐硫杆状菌科(Halothiobacillaceae)盐硫杆状菌属(Halothiobacillus)酸硫杆状菌目(Acidithiobacillales)酸硫杆状菌科(Acidithiobacillaceae)酸硫杆状菌属(Acidithiobacillus)热硫杆状菌科(Thermithiobacillaceae)热硫杆状菌属(Thermithiobacillus)黄色单胞菌目(Xanthomonadales)黄色单胞菌科(Xanthomonadaceae)黄色单胞菌属(Xanthomonas)(Frateuria)(Fulvimonas)(Luteimonas)(Lysobacter)(Nevskia)(Pseudoxanthomonas)(Rhodanobacter)(Schineria)(Stenotrophomonas)(Thermomonas)(Xylella)心杆菌目(Cardiobacteriales)心杆菌科(Cardiobacteriaceae)心杆菌属(Cardiobacterium)(Dichelobacter)(Suttonella)硫发菌目(Thiotrichales)硫发菌科(Thiotrichaceae)硫发菌属(Thiothrix)无色菌属(Achromatium)(Beggiatoa)(Leucothrix)(Thiobacterium)(Thiomargarita)(Thioploca)(Thiospira)(Francisellaceae)(Francisella)(Piscirickettsiaceae)(Piscirickettsia)(Cycloclasticus)(Hydrogenovibrio)(Methylophaga)(Thioalkalimicrobium)(Thiomicrospira)军团菌目(Legionellales)军团菌科(Legionellaceae)军团菌属(Legionella)柯克斯体科(Coxiellaceae)柯克斯体属(Coxiella)(Aquicella)(Rickettsiella)甲基球菌目(Methylococcales)甲基球菌科(Methylococcaceae)甲基球菌属(Methylococcus)(Methylobacter)(Methylocaldum)(Methylomicrobium)(Methylomonas)(Methylosarcina)(Methylosphaera)海洋螺菌目(Oceanospirillales)海洋螺菌科(Oceanospirillaceae)海洋螺菌属(Oceanospirillum)(Balneatrix)(Marinomonas)(Marinospirillum)(Neptunomonas)(Oceanobacter)(Oleispira)(Pseudospirillum)(Thalassolituus)(Alcanivoraceae)(Alcanivorax)(Fundibacter)(Hahellaceae)(Hahella)(Zooshikella)(Halomonadaceae)(Halomonas)(Carnimonas)(Chromohalobacter)(Cobetia)(Deleya)(Zymobacter)(Oleiphilaceae)(Oleiphilus)(Saccharospirillaceae)(Saccharospirillum)假单胞菌目(Pseudomonadales)假单胞菌科(Pseudomonadaceae)假单胞菌属(Pseudomonas)(Azomonas)(Azotobacter)(Cellvibrio)(Chryseomonas)(Flavimonas)(Mesophilobacter)(Rhizobacter)(Rugamonas)(Serpens)莫拉菌科(Moraxellaceae)莫拉菌属(Moraxella)（包含布兰汉氏菌(Branhamella)）不动杆菌属(Acinetobacter)(Psychrobacter)科未定(Enhydrobacter)交替单胞菌目(Alteromonadales)交替单胞菌科(Alteromonadaceae)交替单胞菌属(Alteromonas)(Aestuariibacter)(Alishewanella)(Colwellia)(Ferrimonas)(Glaciecola)(Idiomarina)(Marinobacter)(Marinobacterium)(Microbulbifer)(Moritella)(Pseudoalteromonas)(Psychromonas)(Shewanella)(Thalassomonas)